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Crystal structure of fluorophore-labeled beta-lactamase PenP in complex with cephaloridine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 PEG4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.22 44.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.33 α = 90 b = 91.73 β = 104 c = 66.11 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 64.06 46065
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 24.6 31836 1752 99.03 0.22762 0.22541 0.2225 0.26746 0.2649 RANDOM 23.159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.01 0.08 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.631 r_dihedral_angle_4_deg 17.379 r_dihedral_angle_3_deg 16.173 r_dihedral_angle_1_deg 6.674 r_angle_refined_deg 2.201 r_scangle_it 1.463 r_mcangle_it 0.895 r_scbond_it 0.838 r_mcbond_it 0.49 r_chiral_restr 0.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.631 r_dihedral_angle_4_deg 17.379 r_dihedral_angle_3_deg 16.173 r_dihedral_angle_1_deg 6.674 r_angle_refined_deg 2.201 r_scangle_it 1.463 r_mcangle_it 0.895 r_scbond_it 0.838 r_mcbond_it 0.49 r_chiral_restr 0.194 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3941 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 44
Software Software Software Name Purpose CrystalClear data collection PHASES phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling