☰ Navigation Tabs
Trans-acting transferase from Disorazole synthase in complex with Acetate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RGI PDB entry 3RGI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 30%PEG 3350,200mM ammonium acetate, 100mM Tris. HCl (pH 7.5), VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 46.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.03 α = 90 b = 54.01 β = 90 c = 120.71 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M mirror 2011-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.00 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 35 98.6 0.067 5.3 61823 61823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.39 96.9 0.486 2.8 3.5 4411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3RGI 1.35 35 59636 58636 3118 98.59 0.16162 0.16093 0.1607 0.17427 0.1731 RANDOM 12.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.37 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.147 r_dihedral_angle_4_deg 15.135 r_dihedral_angle_3_deg 11.729 r_dihedral_angle_1_deg 5.13 r_scangle_it 4.363 r_scbond_it 2.67 r_mcangle_it 1.625 r_angle_refined_deg 1.613 r_angle_other_deg 0.927 r_mcbond_it 0.915
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.147 r_dihedral_angle_4_deg 15.135 r_dihedral_angle_3_deg 11.729 r_dihedral_angle_1_deg 5.13 r_scangle_it 4.363 r_scbond_it 2.67 r_mcangle_it 1.625 r_angle_refined_deg 1.613 r_angle_other_deg 0.927 r_mcbond_it 0.915 r_mcbond_other 0.283 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2144 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 31
Software Software Software Name Purpose Blu-Ice data collection REFMAC refinement XDS data reduction XDS data scaling