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Apis mellifera OBP 14 in complex with the citrus odorant citralva (3,7-dimethylocta-2,6-dienenitrile)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3S0A PDB ENTRY 3S0A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.8 293 1.8-1.9 M tri-sodium citrate, 25 mM CHES, pH 9.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.95 36.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.4 α = 90 b = 37.86 β = 90 c = 86.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2011-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.24 45.1 98.4 0.082 12.7 5.3 30933 30933 10.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.24 1.27 99.6 0.6 2.3 5.1 2517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3S0A 1.24 43.08 29803 29803 922 100 0.15942 0.15942 0.15869 0.1804 0.18346 0.2012 RANDOM 7.281
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.26 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.366 r_dihedral_angle_4_deg 11.358 r_dihedral_angle_3_deg 11.18 r_dihedral_angle_1_deg 5.219 r_scangle_it 4.221 r_scbond_it 2.714 r_mcangle_it 1.68 r_angle_refined_deg 1.527 r_mcbond_it 1.011 r_rigid_bond_restr 0.995
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.366 r_dihedral_angle_4_deg 11.358 r_dihedral_angle_3_deg 11.18 r_dihedral_angle_1_deg 5.219 r_scangle_it 4.221 r_scbond_it 2.714 r_mcangle_it 1.68 r_angle_refined_deg 1.527 r_mcbond_it 1.011 r_rigid_bond_restr 0.995 r_angle_other_deg 0.891 r_mcbond_other 0.319 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 943 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 11
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling