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Crystal structure of the TL29 protein from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 291 Reservoir solution:
16 % PEG 4000, 0.2M potassium phosphate, 10 % glycerol.
Protein solution: 16 mM sodium phosphate, 0.1 M NaCl, 10 % glycerol, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.58 52.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.35 α = 90 b = 92.35 β = 90 c = 143.46 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 0.97926 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.28 99.9 0.092 7.2 22173 22173 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.346 4.3 7.3 3160
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 46.17 20985 20985 1130 99.78 0.22753 0.22753 0.22491 0.2179 0.2755 0.2637 RANDOM 50.468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.11 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.361 r_dihedral_angle_4_deg 17.008 r_dihedral_angle_3_deg 16.997 r_dihedral_angle_1_deg 4.666 r_scangle_it 3.871 r_scbond_it 2.434 r_angle_refined_deg 1.336 r_mcangle_it 1.334 r_mcbond_it 0.708 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.361 r_dihedral_angle_4_deg 17.008 r_dihedral_angle_3_deg 16.997 r_dihedral_angle_1_deg 4.666 r_scangle_it 3.871 r_scbond_it 2.434 r_angle_refined_deg 1.336 r_mcangle_it 1.334 r_mcbond_it 0.708 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3904 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 42
Software Software Software Name Purpose MAR345 data collection PHENIX model building REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing