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Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with NADP.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O8N PDB ENTRY 2o8n
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.1 M SODIUM ACETATE, 1.5 M AMMONIUM SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.8 56.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.664 α = 90 b = 126.664 β = 90 c = 108.494 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.12712 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 98.4 0.097 0.097 41.2 9.2 -3 53.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 89.5 0.537 0.537 2.846 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2o8n 2.5 48.63 11447 542 97.52 0.167 0.165 0.1695 0.219 0.2183 RANDOM 59.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.13 -0.26 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.814 r_dihedral_angle_3_deg 18.141 r_dihedral_angle_4_deg 15.795 r_dihedral_angle_1_deg 6.178 r_scangle_it 3.994 r_scbond_it 2.738 r_angle_refined_deg 1.805 r_mcangle_it 1.489 r_angle_other_deg 0.962 r_mcbond_it 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.814 r_dihedral_angle_3_deg 18.141 r_dihedral_angle_4_deg 15.795 r_dihedral_angle_1_deg 6.178 r_scangle_it 3.994 r_scbond_it 2.738 r_angle_refined_deg 1.805 r_mcangle_it 1.489 r_angle_other_deg 0.962 r_mcbond_it 0.77 r_mcbond_other 0.16 r_chiral_restr 0.097 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1808 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing