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Crystal structure of a putative sel1 repeat protein (kpn_04481) from Klebsiella pneumoniae subsp. pneumoniae at 1.65 a resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 10.00% Glycerol, 1.2600M tri-Sodium Citrate, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.45 64.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.508 α = 90 b = 81.508 β = 90 c = 83.343 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Vertical focusing mirror; double crystal Si(111) monochromator 2011-03-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 0.96109,0.97932,0.97915 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 29.136 99.9 0.076 10.9 6.1 38945 38945 27.423
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 100 0.782 0.782 1 6.1 2855
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.65 29.136 38890 1950 99.8 0.1717 0.1706 0.176 0.1936 0.198 RANDOM 31.6678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 0.25 0.5 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.136 r_dihedral_angle_4_deg 16.977 r_dihedral_angle_3_deg 13.131 r_scangle_it 7.356 r_dihedral_angle_1_deg 5.232 r_scbond_it 4.736 r_mcangle_it 3.043 r_mcbond_it 1.818 r_angle_refined_deg 1.436 r_angle_other_deg 1.051
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.136 r_dihedral_angle_4_deg 16.977 r_dihedral_angle_3_deg 13.131 r_scangle_it 7.356 r_dihedral_angle_1_deg 5.232 r_scbond_it 4.736 r_mcangle_it 3.043 r_mcbond_it 1.818 r_angle_refined_deg 1.436 r_angle_other_deg 1.051 r_mcbond_other 0.527 r_chiral_restr 0.089 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1592 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 28
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing SCALA data scaling REFMAC refinement MOSFLM data reduction SHELXD phasing