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Ancylostoma ceylanicum mif in complex with furosemide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OS5 PDB ENTRY 2OS5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M IMIDAZOLE, 0.16-0.24 M ZINC ACETATE, 15-25% PEG3000, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
Crystal Properties Matthews coefficient Solvent content 3.27 62.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.69 α = 90 b = 86.69 β = 90 c = 115.481 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r VERTICAL FOCUSING MIRROR 2009-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 37.54 0.088 5.2 8.8 46509 44447 1 1 20.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 0.266 2.7 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2OS5 1.8 37.54 42127 2248 94.2 0.171 0.169 0.1722 0.205 0.2077 RANDOM 22.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 0.49 0.98 -1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.001 r_dihedral_angle_4_deg 14.135 r_dihedral_angle_3_deg 10.707 r_dihedral_angle_1_deg 6.166 r_scangle_it 5.793 r_scbond_it 3.997 r_angle_refined_deg 2.34 r_mcangle_it 2.269 r_mcbond_it 1.542 r_chiral_restr 0.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.001 r_dihedral_angle_4_deg 14.135 r_dihedral_angle_3_deg 10.707 r_dihedral_angle_1_deg 6.166 r_scangle_it 5.793 r_scbond_it 3.997 r_angle_refined_deg 2.34 r_mcangle_it 2.269 r_mcbond_it 1.542 r_chiral_restr 0.224 r_bond_refined_d 0.05 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2675 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 122
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling