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Crystal structure of Mycobacterium smegmatis CYP164A2 in ligand free state
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.1M HEPES, 0.8M Sodium dihydrogen phosphate, 0.8M Potassium dihydrogen phosphate, 3% w/v 6-Aminohexanoic acid, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.1 60.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.396 α = 90 b = 102.776 β = 90.06 c = 92.412 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r 2010-02-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9108, 1.7394, 1.7423, 1.7035 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 92.45 99.9 0.065 131656 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.96 99.7 0.676 2 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.89 92.45 124989 6616 99.52 0.18407 0.18314 0.1959 0.20189 0.2011 RANDOM 16.393
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 -0.05 0.3 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.999 r_dihedral_angle_4_deg 15.163 r_dihedral_angle_3_deg 13.432 r_dihedral_angle_1_deg 4.992 r_scangle_it 3.386 r_scbond_it 2.01 r_mcangle_it 1.3 r_angle_refined_deg 1.246 r_mcbond_it 0.683 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.999 r_dihedral_angle_4_deg 15.163 r_dihedral_angle_3_deg 13.432 r_dihedral_angle_1_deg 4.992 r_scangle_it 3.386 r_scbond_it 2.01 r_mcangle_it 1.3 r_angle_refined_deg 1.246 r_mcbond_it 0.683 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8961 Nucleic Acid Atoms Solvent Atoms 703 Heterogen Atoms 255
Software Software Software Name Purpose GDA data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling