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Joint Neutron and X-ray structure of Cytochrome c peroxidase
NEUTRON DIFFRACTION - X-RAY DIFFRACTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 6 298 50mM potassium phosphate, 30% MPD, pH 6.0(in D2O), MICRODIALYSIS, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.16 61.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.547 α = 90 b = 76.655 β = 90 c = 107.078 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 298 IMAGE PLATE 2009-06-23 M LAUE 2 1 x-ray 298 IMAGE PLATE RIGAKU RAXIS IV 2009-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 NUCLEAR REACTOR ILL BEAMLINE LADI III 3.2-4.2 ILL LADI III 2 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 53.55 76.3 0.168 7.8 4.6 16906 12900 29.96 2 2.1 43.893 89.9 22900
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 0.194 5 2.5 1358 2 2.1 2.17
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B NEUTRON DIFFRACTION MOLECULAR REPLACEMENT 2.4 53.539 12900 1290 75.01 0.2115 0.2071 0.2499 X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.1 43.893 1.36 22900 2292 89.89 0.1698 0.1662 0.1611 0.2027 0.2269 32.4685
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.956 -1.5485 -11.8662 1.3301 5.3682 -9.8548
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.996 f_angle_d 1.649 f_chiral_restr 0.173 f_bond_d 0.016 f_plane_restr 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2367 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 43
Software Software Software Name Purpose QLD data collection PHENIX model building PHENIX refinement LAUEGEN data reduction SCALA data scaling PHENIX phasing