☰ Navigation Tabs
The glutathione bound structure of YqjG, a glutathione transferase homolog from Escherichia coli K-12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.8 M Ammonium sulfate, 50 mM MES, pH 6.5, 5% v/v 1,4-dioxane, 5 mM Glutathione, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.55 72.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.201 α = 90 b = 147.201 β = 90 c = 108.87 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.17 50 99.4 0.069 18.5 5.3 71532 71103 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.17 2.21 92.2 0.488 2.1 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.205 42.49 65002 65002 3469 99.6 0.18235 0.18086 0.1785 0.21075 0.2072 RANDOM 43.604
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.05 0.09 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.033 r_dihedral_angle_4_deg 23.735 r_dihedral_angle_3_deg 17.696 r_dihedral_angle_1_deg 8.111 r_scangle_it 8.041 r_scbond_it 5.614 r_mcangle_it 3.598 r_mcbond_it 2.173 r_angle_refined_deg 1.836 r_chiral_restr 0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.033 r_dihedral_angle_4_deg 23.735 r_dihedral_angle_3_deg 17.696 r_dihedral_angle_1_deg 8.111 r_scangle_it 8.041 r_scbond_it 5.614 r_mcangle_it 3.598 r_mcbond_it 2.173 r_angle_refined_deg 1.836 r_chiral_restr 0.178 r_gen_planes_refined 0.021 r_bond_refined_d 0.016 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4987 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 85
Software Software Software Name Purpose SOLVE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling