☰ Navigation Tabs
Crystal Structure of BPTF bromo in complex with histone H4K16ac - Form I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F6J PDB ENTRY 2F6J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 100 mM Tris-HCl pH 8.0, 20% Glycerol, vapor diffusion, hanging drop
Crystal Properties Matthews coefficient Solvent content 1.8 31.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.739 α = 90 b = 27.197 β = 89.87 c = 84.198 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 2007-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9792 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 97.7 0.114 16.8 3.2 19304
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 97.6 0.562 3.1 1883
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2F6J 1.8 17.75 18657 1466 94.71 0.1778 0.1733 0.1762 0.2301 0.2346 RANDOM 17.635
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.14 r_dihedral_angle_4_deg 23.408 r_dihedral_angle_3_deg 15.333 r_scangle_it 6.289 r_dihedral_angle_1_deg 5.745 r_scbond_it 3.822 r_mcangle_it 2.212 r_angle_refined_deg 1.799 r_mcbond_it 1.253 r_chiral_restr 0.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.14 r_dihedral_angle_4_deg 23.408 r_dihedral_angle_3_deg 15.333 r_scangle_it 6.289 r_dihedral_angle_1_deg 5.745 r_scbond_it 3.822 r_mcangle_it 2.212 r_angle_refined_deg 1.799 r_mcbond_it 1.253 r_chiral_restr 0.127 r_bond_refined_d 0.022 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1978 Nucleic Acid Atoms Solvent Atoms 209 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction