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Crystal structure of HA2 R106H mutant of H2 hemagglutinin, neutral pH form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.1 295.5 28% PEG 3000, 0.1M Tris, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 295.5K
Crystal Properties Matthews coefficient Solvent content 2.99 58.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.288 α = 90 b = 70.288 β = 90 c = 237.136 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-01-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 35 99.7 0.065 16.1 8.1 46401
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.97 2.04 99.2 0.432 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.97 35 44030 2346 99.72 0.18713 0.18504 0.2268 0.2351 RANDOM 37.403
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 0.53 1.06 -1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.798 r_dihedral_angle_4_deg 19.594 r_dihedral_angle_3_deg 13.87 r_dihedral_angle_1_deg 6.19 r_scangle_it 4.115 r_scbond_it 2.486 r_mcangle_it 1.563 r_angle_refined_deg 1.472 r_mcbond_it 0.841 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.798 r_dihedral_angle_4_deg 19.594 r_dihedral_angle_3_deg 13.87 r_dihedral_angle_1_deg 6.19 r_scangle_it 4.115 r_scbond_it 2.486 r_mcangle_it 1.563 r_angle_refined_deg 1.472 r_mcbond_it 0.841 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.267 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.181 r_symmetry_vdw_refined 0.18 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3929 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 67
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling