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LVFFA segment from Alzheimer's Amyloid-Beta displayed on 42-membered macrocycle scaffold, bromide derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 291 0.1 M sodium acetate pH 4.6, 0.17 mM calcium chloride dehydrate, 20% (v/v) 2-propanol, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 5.06 75.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.98 α = 90 b = 58.98 β = 90 c = 128.511 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9794 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 80 100 0.065 14.2 13.6 16219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.478 14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 53.6 15269 808 99.08 0.19682 0.19581 0.1957 0.21827 0.2203 RANDOM 26.798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.3 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.045 r_dihedral_angle_2_deg 11.177 r_dihedral_angle_1_deg 8.74 r_scangle_it 4.75 r_scbond_it 3.744 r_mcangle_it 2.458 r_mcbond_it 1.785 r_angle_refined_deg 1.16 r_mcbond_other 0.669 r_angle_other_deg 0.623
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.045 r_dihedral_angle_2_deg 11.177 r_dihedral_angle_1_deg 8.74 r_scangle_it 4.75 r_scbond_it 3.744 r_mcangle_it 2.458 r_mcbond_it 1.785 r_angle_refined_deg 1.16 r_mcbond_other 0.669 r_angle_other_deg 0.623 r_chiral_restr 0.083 r_bond_refined_d 0.016 r_gen_planes_refined 0.012 r_bond_other_d 0.007 r_gen_planes_other 0.004 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 744 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 33
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction