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Bovine GRK2 in complex with Gbetagamma subunits and a selective kinase inhibitor (CMPD101)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OMW PDB ENTRY 1OMW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.25 277 7% PEG3350, 200 mM NaCl, 100 mM MES pH 5.25, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.03 59.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 186.504 α = 90 b = 73.502 β = 115.1 c = 121.993 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD MARMOSAIC 300 mm CCD 2009-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.478 30 99.1 0.085 16.4 6.4 51786 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 98.6 6.5 5149
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OMW 2.48 30 49091 2636 96.88 0.2288 0.2264 0.2289 0.2743 0.271 RANDOM 89.4873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.17 -5.03 5.17 -5.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.691 r_dihedral_angle_4_deg 17.255 r_dihedral_angle_3_deg 15.759 r_dihedral_angle_1_deg 6.197 r_scangle_it 1.469 r_angle_refined_deg 1.13 r_scbond_it 0.902 r_angle_other_deg 0.779 r_mcangle_it 0.608 r_mcbond_it 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.691 r_dihedral_angle_4_deg 17.255 r_dihedral_angle_3_deg 15.759 r_dihedral_angle_1_deg 6.197 r_scangle_it 1.469 r_angle_refined_deg 1.13 r_scbond_it 0.902 r_angle_other_deg 0.779 r_mcangle_it 0.608 r_mcbond_it 0.319 r_chiral_restr 0.062 r_mcbond_other 0.052 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8086 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing