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Structure of Glutathione S-transferase(PP0183) from Pseudomonas putida in complex with GSH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LXZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 298 0.1M Bis-Tris pH5.5, 1% PEG 3350, 1.0M Ammonium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.7 54.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.032 α = 89.92 b = 66.012 β = 85.55 c = 88.853 γ = 86.5
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-04-22 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9793 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 96.8 0.08 10.7 2.2 97182
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 95.8 0.376 2.2 4845
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3LXZ 1.8 40 97181 4846 96.48 0.1727 0.1712 0.1802 0.2025 0.2115 RANDOM 22.1962
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 -0.01 0.09 0.77 -0.19 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.878 r_dihedral_angle_4_deg 19.13 r_dihedral_angle_3_deg 13.323 r_dihedral_angle_1_deg 5.045 r_scangle_it 4.281 r_scbond_it 2.594 r_mcangle_it 1.519 r_angle_refined_deg 1.405 r_mcbond_it 0.812 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.878 r_dihedral_angle_4_deg 19.13 r_dihedral_angle_3_deg 13.323 r_dihedral_angle_1_deg 5.045 r_scangle_it 4.281 r_scbond_it 2.594 r_mcangle_it 1.519 r_angle_refined_deg 1.405 r_mcbond_it 0.812 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6776 Nucleic Acid Atoms Solvent Atoms 639 Heterogen Atoms 95
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing