3PCI

STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-IODO-4-HYDROXYBENZOATE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.4pH 8.4
Crystal Properties
Matthews coefficientSolvent content
2.8356.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 197α = 90
b = 127.07β = 97.53
c = 134.08γ = 90
Symmetry
Space GroupI 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray296AREA DETECTORSIEMENSCOLLIMATOR1992-02-05M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2110830.05514.321.611353341
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.212.35431.31.2

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONNATIVE MODEL PHASES2.2161113850830.15922.94
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.3
p_staggered_tor17
p_planar_tor2
p_scangle_it1.75
p_scbond_it1.048
p_mcangle_it0.945
p_mcbond_it0.526
p_chiral_restr0.221
p_multtor_nbd0.21
p_singtor_nbd0.178
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor23.3
p_staggered_tor17
p_planar_tor2
p_scangle_it1.75
p_scbond_it1.048
p_mcangle_it0.945
p_mcbond_it0.526
p_chiral_restr0.221
p_multtor_nbd0.21
p_singtor_nbd0.178
p_xyhbond_nbd0.17
p_angle_d0.029
p_planar_d0.029
p_bond_d0.015
p_plane_restr0.012
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20466
Nucleic Acid Atoms
Solvent Atoms1476
Heterogen Atoms162

Software

Software
Software NamePurpose
PROLSQrefinement
XENGENdata reduction
XENGENdata scaling