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Mycobacterium tuberculosis PknB kinase domain L33D mutant (crystal form 3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MRU PDB entry 1mru
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 25% PEG 3350, 100mM Tris pH 8.5, 200mM ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.01 38.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.191 α = 90 b = 50.633 β = 90 c = 132.762 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.8927 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 20 99.7 0.087 11.1 3.7 6052
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3.06 99.9 0.406 3.1 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1mru 2.9 20 6052 338 100 0.21379 0.21057 0.2115 0.27658 0.2789 RANDOM 41.378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.78 -2.59 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.413 r_dihedral_angle_4_deg 14.475 r_dihedral_angle_3_deg 13.981 r_dihedral_angle_1_deg 3.736 r_angle_refined_deg 1 r_nbtor_refined 0.296 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.176 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.413 r_dihedral_angle_4_deg 14.475 r_dihedral_angle_3_deg 13.981 r_dihedral_angle_1_deg 3.736 r_angle_refined_deg 1 r_nbtor_refined 0.296 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.176 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.059 r_bond_refined_d 0.011 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1981 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 32
Software Software Software Name Purpose Blu-Ice data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling