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Crystal structure of a putative isochorismatase (Bxe_A0706) from BURKHOLDERIA XENOVORANS LB400 at 1.22 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.9 293 20.0% polyethylene glycol 3000, 0.15M sodium chloride, 0.1M HEPES pH 7.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.9 35.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.369 α = 90 b = 103.135 β = 98.94 c = 45.062 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2010-02-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97937,0.97898 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 29.574 95.1 0.04 9.46 99282 -3 10.39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.22 1.26 92.1 0.444 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.22 29.574 99237 4954 99.42 0.1413 0.14 0.1497 0.1664 0.1727 RANDOM 15.4416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 1.7 -2.11 1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.854 r_dihedral_angle_4_deg 18.909 r_dihedral_angle_3_deg 11.644 r_sphericity_free 9.713 r_sphericity_bonded 6.295 r_dihedral_angle_1_deg 6.23 r_scangle_it 4.581 r_scbond_it 3.322 r_mcangle_it 2.478 r_mcbond_it 1.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.854 r_dihedral_angle_4_deg 18.909 r_dihedral_angle_3_deg 11.644 r_sphericity_free 9.713 r_sphericity_bonded 6.295 r_dihedral_angle_1_deg 6.23 r_scangle_it 4.581 r_scbond_it 3.322 r_mcangle_it 2.478 r_mcbond_it 1.827 r_angle_refined_deg 1.776 r_rigid_bond_restr 1.689 r_mcbond_other 1.241 r_angle_other_deg 1.028 r_chiral_restr 0.111 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3119 Nucleic Acid Atoms Solvent Atoms 481 Heterogen Atoms 15
Software Software Software Name Purpose SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing