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Crystal structure of the human Bach2 POZ domain, form II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OHU PDB code 3ohu
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 0.2 M ammonium sulphate
0.1 M MES pH 5.5
4% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.55 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.68 α = 90 b = 96.95 β = 101.06 c = 82.48 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2010-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97950 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 48.48 99.2 0.105 0.126 8.9 3.1 43663 43314 33.012
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.7 0.718 0.865 1.7 3.1 6332
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB code 3ohu 2.2 48.48 41482 41113 2180 99.11 0.22348 0.22608 0.22348 0.2304 0.27349 0.2795 RANDOM 31.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.77 2.23 -2.29 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.178 r_dihedral_angle_4_deg 16.726 r_dihedral_angle_3_deg 15.336 r_dihedral_angle_1_deg 6.002 r_scangle_it 2.539 r_scbond_it 1.589 r_angle_refined_deg 1.296 r_mcangle_it 1.056 r_mcbond_it 0.566 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.178 r_dihedral_angle_4_deg 16.726 r_dihedral_angle_3_deg 15.336 r_dihedral_angle_1_deg 6.002 r_scangle_it 2.539 r_scbond_it 1.589 r_angle_refined_deg 1.296 r_mcangle_it 1.056 r_mcbond_it 0.566 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5731 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling