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Fk1 domain mutant A19T of FKBP51, crystal form IV, in presence of DMSO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5P PDB entry 3O5P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 37.5 % PEG3350, 0.1 M NH4OAc, 0.1 M HEPES, 10 % DMSO, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 46.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.396 α = 90 b = 53.514 β = 90 c = 56.381 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.886 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.949 33.885 94.6 0.032 0.032 19.7 3.5 74281 74281 5.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.949 1.01 88.3 0.3 0.3 2.6 2.9 9958
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3O5P 0.96 20 74221 3687 94.11 0.1308 0.1296 0.1364 0.1525 0.1613 RANDOM 9.7308
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.12 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.928 r_dihedral_angle_3_deg 12.277 r_dihedral_angle_4_deg 10.626 r_dihedral_angle_1_deg 7.671 r_sphericity_free 6.497 r_scangle_it 3.693 r_sphericity_bonded 3.522 r_scbond_it 2.994 r_mcangle_it 2.087 r_mcbond_it 1.594
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.928 r_dihedral_angle_3_deg 12.277 r_dihedral_angle_4_deg 10.626 r_dihedral_angle_1_deg 7.671 r_sphericity_free 6.497 r_scangle_it 3.693 r_sphericity_bonded 3.522 r_scbond_it 2.994 r_mcangle_it 2.087 r_mcbond_it 1.594 r_angle_refined_deg 1.546 r_rigid_bond_restr 1.219 r_angle_other_deg 0.888 r_mcbond_other 0.606 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.252 r_xyhbond_nbd_refined 0.233 r_nbd_other 0.219 r_symmetry_vdw_other 0.183 r_symmetry_hbond_refined 0.18 r_nbtor_refined 0.175 r_chiral_restr 0.101 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 971 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms 8
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling