☰ Navigation Tabs
Crystal structure of the Rous Associated Virus Integrase catalytic domain A182T in citrate buffer pH 6.2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 290 20% (w/v) PEG 4000, 10% isopropanol and 0.1 M Na citrate pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.59 52.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.49 α = 90 b = 65.49 β = 90 c = 79.16 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Synchrotron optics 2010-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.979680 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 20 97.38 0.049 20.94 4.5 24970 25642
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.6 95.2 0.256 5.36 3.5 2278
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.55 19.99 23721 23721 1249 100 0.16646 0.16646 0.16411 0.1593 0.21125 0.2074 RANDOM 15.176
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.05 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.124 r_dihedral_angle_4_deg 19.545 r_dihedral_angle_3_deg 13.401 r_scangle_it 8.069 r_scbond_it 5.727 r_dihedral_angle_1_deg 5.603 r_mcangle_it 3.574 r_rigid_bond_restr 2.864 r_mcbond_it 2.443 r_angle_refined_deg 1.722
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.124 r_dihedral_angle_4_deg 19.545 r_dihedral_angle_3_deg 13.401 r_scangle_it 8.069 r_scbond_it 5.727 r_dihedral_angle_1_deg 5.603 r_mcangle_it 3.574 r_rigid_bond_restr 2.864 r_mcbond_it 2.443 r_angle_refined_deg 1.722 r_chiral_restr 0.132 r_bond_refined_d 0.026 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1068 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 13
Software Software Software Name Purpose ADSC data collection REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing