3O14

Crystal structure of an anti-ECFsigma factor, ChrR (Maqu_0586) from MARINOBACTER AQUAEOLEI VT8 at 1.70 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP10.92770.2000M lithium sulfate, 2.5000M ammonium sulfate, 0.1M CAPS pH 10.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2745.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.105α = 75.96
b = 45.773β = 71.08
c = 65.892γ = 63.35
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat collimating mirror, toroid focusing mirror2010-05-13MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.91837,0.97936SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.729.40297.30.0747.42463524635211.168
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7495.80.3170.3172.423394

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.729.40246346234997.360.1540.15220.1872RANDOM15.2051
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.62-0.53-0.260.270.13-0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.701
r_dihedral_angle_4_deg17.502
r_dihedral_angle_3_deg11.436
r_dihedral_angle_1_deg6.998
r_scangle_it3.737
r_scbond_it2.336
r_angle_refined_deg1.519
r_mcangle_it1.357
r_angle_other_deg0.908
r_mcbond_it0.777
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.701
r_dihedral_angle_4_deg17.502
r_dihedral_angle_3_deg11.436
r_dihedral_angle_1_deg6.998
r_scangle_it3.737
r_scbond_it2.336
r_angle_refined_deg1.519
r_mcangle_it1.357
r_angle_other_deg0.908
r_mcbond_it0.777
r_mcbond_other0.228
r_chiral_restr0.1
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3383
Nucleic Acid Atoms
Solvent Atoms556
Heterogen Atoms100

Software

Software
Software NamePurpose
SHELXphasing
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SHELXDphasing
autoSHARPphasing