3NWH

Crystal structure of BST2/Tetherin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.2298PEG MME 2K, pH 7.2, vapor diffusion, temperature 298K
Crystal Properties
Matthew coefficientSolvent content
2.550.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 26.55α = 90
b = 59.584β = 91.56
c = 159.473γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2009-12-02MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-10.9805, 0.9919, 0.9809SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.65097.50.058133.61549315096
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.62.6993.20.2693.983.32788

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.633.131550015096114797.440.26220.26010.2877RANDOM56.2268
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.17-4.463.31-2.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.173
r_dihedral_angle_4_deg23.294
r_dihedral_angle_3_deg22.689
r_dihedral_angle_1_deg5.343
r_angle_other_deg2.903
r_angle_refined_deg1.614
r_chiral_restr0.099
r_bond_refined_d0.018
r_bond_other_d0.006
r_gen_planes_refined0.005
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.173
r_dihedral_angle_4_deg23.294
r_dihedral_angle_3_deg22.689
r_dihedral_angle_1_deg5.343
r_angle_other_deg2.903
r_angle_refined_deg1.614
r_chiral_restr0.099
r_bond_refined_d0.018
r_bond_other_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3212
Nucleic Acid Atoms
Solvent Atoms18
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection
PHENIXphasing