☰ Navigation Tabs
Crystal Structure of OmpF, an Outer Membrane Protein from Salmonella typhi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 0.1M Tri sodium citrate, 0.25M potassium sodium tartrate, 2M Ammonium sulphate, pH 5.4, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 3.9 68.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.185 α = 90 b = 139.335 β = 90 c = 150.772 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2007-12-13 SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.979 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 50 84.4 0.092 8 7.7 38061
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 57.1 0.364 4.8 2529
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.79 42.59 36118 1898 84.08 0.25887 0.25489 0.2805 0.33672 0.3501 RANDOM 61.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.81 12.44 -7.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.117 r_dihedral_angle_3_deg 24.299 r_dihedral_angle_4_deg 21.236 r_dihedral_angle_1_deg 7.848 r_scangle_it 2.068 r_angle_refined_deg 1.656 r_scbond_it 1.28 r_mcangle_it 1.105 r_mcbond_it 0.591 r_chiral_restr 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.117 r_dihedral_angle_3_deg 24.299 r_dihedral_angle_4_deg 21.236 r_dihedral_angle_1_deg 7.848 r_scangle_it 2.068 r_angle_refined_deg 1.656 r_scbond_it 1.28 r_mcangle_it 1.105 r_mcbond_it 0.591 r_chiral_restr 0.16 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8007 Nucleic Acid Atoms Solvent Atoms 387 Heterogen Atoms 1038
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction