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Structure of human CDC2-like kinase 2 (CLK2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EU9 PDB entry 2EU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.3 277.15 25% MPD, 0.1M Bicine, pH 9.3, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.36 47.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.678 α = 90 b = 97.678 β = 90 c = 223.029 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M two K-B pairs of bimorph type mirrors 2010-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9778 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.89 55.9 99.3 0.173 8.5 4.9 28186 28133 65.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.89 3.04 99.2 0.989 2 5 4062
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2EU9 2.89 48.84 28133 26717 1416 98.73 0.19686 0.19399 0.1971 0.25193 0.2517 RANDOM 38.575
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.57 1.28 2.57 -3.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.152 r_dihedral_angle_4_deg 21.245 r_dihedral_angle_3_deg 16.084 r_dihedral_angle_1_deg 5.844 r_angle_refined_deg 1.427 r_angle_other_deg 1.012 r_chiral_restr 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.152 r_dihedral_angle_4_deg 21.245 r_dihedral_angle_3_deg 16.084 r_dihedral_angle_1_deg 5.844 r_angle_refined_deg 1.427 r_angle_other_deg 1.012 r_chiral_restr 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8427 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 72
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling