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Crystal structure of P38 alpha in complex with DP1376
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 290 20% PEG 3350, 200MM LITIUM CITRATE, SOAKED WITH COMPOUND, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.05 59.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.5 α = 90 b = 86.183 β = 90 c = 126.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2006-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 31.5 83.9 0.076 0.076 7.8 5.2 24922 24922
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.15 77 1.1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 20 17338 17338 913 0.18 0.18 0.177 0.1819 0.227 0.2271 RANDOM 32.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.84 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.724 r_dihedral_angle_4_deg 19.422 r_dihedral_angle_3_deg 16.696 r_dihedral_angle_1_deg 6.347 r_scangle_it 3.319 r_scbond_it 2.068 r_mcangle_it 1.63 r_angle_refined_deg 1.591 r_mcbond_it 0.922 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.724 r_dihedral_angle_4_deg 19.422 r_dihedral_angle_3_deg 16.696 r_dihedral_angle_1_deg 6.347 r_scangle_it 3.319 r_scbond_it 2.068 r_mcangle_it 1.63 r_angle_refined_deg 1.591 r_mcbond_it 0.922 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.252 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2804 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 32
Software Software Software Name Purpose StructureStudio data collection REFMAC refinement MOSFLM data reduction SCALA data scaling