☰ Navigation Tabs
GYVLGS segment 127-132 from human prion with V129
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 0.1M Sodium Acetate pH 5.5, PEG 10,000, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.57 21.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.173 α = 90 b = 18.959 β = 90 c = 9.585 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97915 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 90 91.5 0.193 7.9 5.7 637
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 56.4 0.223 3.2 31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.92 20.58 621 63 91.59 0.2097 0.2033 0.2156 0.2613 0.2444 RANDOM 10.8356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 0.97 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.528 r_dihedral_angle_1_deg 6.083 r_dihedral_angle_2_deg 5.255 r_scangle_it 2.388 r_scbond_it 1.997 r_mcangle_it 1.836 r_angle_refined_deg 1.48 r_mcbond_it 1.131 r_angle_other_deg 0.801 r_mcbond_other 0.237
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.528 r_dihedral_angle_1_deg 6.083 r_dihedral_angle_2_deg 5.255 r_scangle_it 2.388 r_scbond_it 1.997 r_mcangle_it 1.836 r_angle_refined_deg 1.48 r_mcbond_it 1.131 r_angle_other_deg 0.801 r_mcbond_other 0.237 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 84 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 8
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction