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A mutant human Prolactin receptor antagonist H30A in complex with the extracellular domain of the human prolactin receptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MZG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 3.7M NaCl, 0.1 M Hepes pH 7.5, temperature 291K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 3.5 64.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.54 α = 90 b = 123.54 β = 90 c = 73.33 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0810 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.787 106.989 37230
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3MZG 2.1 29.67 35327 1901 99.81 0.18223 0.17996 0.18 0.22388 0.2223 RANDOM 34.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -0.71 -1.42 2.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.402 r_dihedral_angle_4_deg 22.338 r_dihedral_angle_3_deg 17.364 r_dihedral_angle_1_deg 6.849 r_scangle_it 6.01 r_scbond_it 3.735 r_mcangle_it 2.631 r_angle_refined_deg 2.049 r_mcbond_it 1.426 r_chiral_restr 0.155
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.402 r_dihedral_angle_4_deg 22.338 r_dihedral_angle_3_deg 17.364 r_dihedral_angle_1_deg 6.849 r_scangle_it 6.01 r_scbond_it 3.735 r_mcangle_it 2.631 r_angle_refined_deg 2.049 r_mcbond_it 1.426 r_chiral_restr 0.155 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3204 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 4
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction