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Crystal Structure of the TK3 TCR in complex with HLA-B*3501/HPVG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 277 15%PEG 3350, 0.2M LiSO4, 0.1M Na-citrate, pH 5.6, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.47 50.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.86 α = 94.64 b = 62.24 β = 103.92 c = 92.56 γ = 109.31
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.979457 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100 97 0.103 10.84 59242 -3 28.301
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 95.7 0.544 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION 2FYY, 3FFC THROUGHOUT 2 57.83 59241 3014 97.08 0.228 0.225 0.286 0.2663 RANDOM 39.633
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.14 1.03 -1.84 0.34 2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.544 r_dihedral_angle_3_deg 18.908 r_dihedral_angle_4_deg 15.768 r_dihedral_angle_1_deg 6.492 r_scangle_it 2.056 r_scbond_it 1.319 r_angle_refined_deg 1.256 r_mcangle_it 0.878 r_mcbond_it 0.482 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.544 r_dihedral_angle_3_deg 18.908 r_dihedral_angle_4_deg 15.768 r_dihedral_angle_1_deg 6.492 r_scangle_it 2.056 r_scbond_it 1.319 r_angle_refined_deg 1.256 r_mcangle_it 0.878 r_mcbond_it 0.482 r_chiral_restr 0.089 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6654 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 5
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction