X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5294100mM HEPES, 20% PEG 3350, 150mM HCO2Na, 10 mM K2Pt(CN)4, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.3647.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.476α = 90
b = 120.989β = 90
c = 157.683γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.39698.60.06123.163.735353
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.4299.40.3823.43.75400

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.330.5135353185598.60.2540.2540.287RANDOM35.398
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.12-0.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.157
r_dihedral_angle_4_deg20.154
r_dihedral_angle_3_deg19.583
r_dihedral_angle_1_deg7.842
r_scangle_it7.396
r_scbond_it5.221
r_mcangle_it3.698
r_mcbond_it2.272
r_angle_refined_deg2.17
r_chiral_restr0.165
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.157
r_dihedral_angle_4_deg20.154
r_dihedral_angle_3_deg19.583
r_dihedral_angle_1_deg7.842
r_scangle_it7.396
r_scbond_it5.221
r_mcangle_it3.698
r_mcbond_it2.272
r_angle_refined_deg2.17
r_chiral_restr0.165
r_bond_refined_d0.03
r_gen_planes_refined0.012
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5453
Nucleic Acid Atoms
Solvent Atoms170
Heterogen Atoms

Software

Software
Software NamePurpose
ADSCdata collection
SHELXDphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling