3MHZ

1.7A structure of 2-fluorohistidine labeled Protective Antigen


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.229330% PEG 400, 0.1M Tris, pH 8.2, vapor diffusion, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4148.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.368α = 90
b = 93.975β = 90
c = 119.115γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2009-08-12SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-BM1.0000APS17-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75098.70.0939.86.68835288352
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7689.50.5891.8974.77898

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONDirect ReplacementTHROUGHOUTA lower resolution structure was initially solved from in-house diffraction data by molecular replacement using 1ACC as the starting model. The resulting model was then refined against the high resolution synchrotron data.1.7508751987519440098.6690.19170.221727.856
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.809-0.6042.413
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.155
r_dihedral_angle_3_deg13.972
r_dihedral_angle_4_deg12.072
r_dihedral_angle_1_deg6.435
r_scangle_it3.852
r_scbond_it2.452
r_scangle_other1.866
r_angle_refined_deg1.733
r_mcangle_it1.583
r_angle_other_deg0.956
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.155
r_dihedral_angle_3_deg13.972
r_dihedral_angle_4_deg12.072
r_dihedral_angle_1_deg6.435
r_scangle_it3.852
r_scbond_it2.452
r_scangle_other1.866
r_angle_refined_deg1.733
r_mcangle_it1.583
r_angle_other_deg0.956
r_mcbond_it0.91
r_mcangle_other0.716
r_scbond_other0.499
r_mcbond_other0.282
r_nbd_refined0.209
r_symmetry_vdw_other0.192
r_nbtor_refined0.173
r_xyhbond_nbd_refined0.139
r_symmetry_hbond_refined0.12
r_symmetry_vdw_refined0.119
r_chiral_restr0.106
r_metal_ion_refined0.086
r_symmetry_hbond_other0.037
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5281
Nucleic Acid Atoms
Solvent Atoms400
Heterogen Atoms15

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling