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14-3-3 sigma in complex with YAP pS127-peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LW1 pdb entry 3lw1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 277 0.095M HEPES Na-Salt pH7.4, 25.6% PEG 400, 0.19M CaCl2, 5% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.62 52.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.27 α = 90 b = 112.11 β = 90 c = 62.85 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.85 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 45.62 99.8 0.08 16.54 5.31 103010 102833 -3 -3 14.083
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.2 99.9 0.351 5.23 4.95 12258
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3lw1 1.15 45.62 97691 5142 100 0.12779 0.1265 0.1252 0.15298 0.1519 RANDOM 10.718
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.11 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.222 r_dihedral_angle_4_deg 16.706 r_dihedral_angle_1_deg 14.835 r_dihedral_angle_3_deg 13.087 r_scangle_it 7.821 r_scbond_it 5.317 r_mcangle_it 3.457 r_mcbond_it 2.333 r_rigid_bond_restr 2.185 r_angle_refined_deg 2.055
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.222 r_dihedral_angle_4_deg 16.706 r_dihedral_angle_1_deg 14.835 r_dihedral_angle_3_deg 13.087 r_scangle_it 7.821 r_scbond_it 5.317 r_mcangle_it 3.457 r_mcbond_it 2.333 r_rigid_bond_restr 2.185 r_angle_refined_deg 2.055 r_angle_other_deg 1.042 r_mcbond_other 0.775 r_chiral_restr 0.117 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1926 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 27
Software Software Software Name Purpose Pro data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling