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Structure of the E. coli chaperone PAPD in complex with the pilin domain of the PapGII adhesin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.3 293 1M SODIUM MALONATE, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.665 α = 90 b = 65.845 β = 90 c = 56.525 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 2008-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 28.4 99.9 0.108 23.9 14 24169 2 27.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.03 2.08 97.7 5.7 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.03 28.26 24168 1296 99.6 0.182 0.182 0.1915 0.19 0.1998 RANDOM 27.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.15 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.46 r_dihedral_angle_4_deg 21.203 r_dihedral_angle_3_deg 16.28 r_dihedral_angle_1_deg 6.048 r_scangle_it 4.22 r_angle_other_deg 4.076 r_scbond_it 2.934 r_mcangle_it 2.217 r_mcbond_it 1.274 r_angle_refined_deg 1.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.46 r_dihedral_angle_4_deg 21.203 r_dihedral_angle_3_deg 16.28 r_dihedral_angle_1_deg 6.048 r_scangle_it 4.22 r_angle_other_deg 4.076 r_scbond_it 2.934 r_mcangle_it 2.217 r_mcbond_it 1.274 r_angle_refined_deg 1.114 r_symmetry_vdw_other 0.334 r_nbd_other 0.272 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.229 r_symmetry_hbond_refined 0.212 r_xyhbond_nbd_refined 0.194 r_nbtor_refined 0.193 r_nbtor_other 0.118 r_xyhbond_nbd_other 0.114 r_chiral_restr 0.096 r_bond_refined_d 0.022 r_gen_planes_refined 0.003 r_gen_planes_other 0.003 r_bond_other_d r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2683 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling