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HIV protease complexed with compound 10b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 5.3 298 NaCl, pH 5.3, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.66 53.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.173 α = 90 b = 85.934 β = 90 c = 46.134 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2007-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 94.3 0.106 7.2 3.3 20865
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 92.6 0.379 3.4 2010
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.8 20 20224 1082 96.11 0.19 0.187 0.23 0.2174 RANDOM 11.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.37 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.681 r_dihedral_angle_4_deg 21.832 r_dihedral_angle_3_deg 10.598 r_dihedral_angle_1_deg 5.814 r_sphericity_free 5.232 r_scangle_it 3.315 r_sphericity_bonded 2.231 r_scbond_it 2.179 r_mcangle_it 1.44 r_rigid_bond_restr 1.382
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.681 r_dihedral_angle_4_deg 21.832 r_dihedral_angle_3_deg 10.598 r_dihedral_angle_1_deg 5.814 r_sphericity_free 5.232 r_scangle_it 3.315 r_sphericity_bonded 2.231 r_scbond_it 2.179 r_mcangle_it 1.44 r_rigid_bond_restr 1.382 r_angle_refined_deg 1.344 r_mcbond_it 1.023 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.284 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.089 r_symmetry_hbond_refined 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1520 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 95
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing