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HIV-1 RT with NNRTI TMC-125
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 1.4 M Na Malonate, 50mM KPO4 pH 7.2, 5% Ethylene Glycol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.03 59.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.441 α = 90 b = 153.533 β = 90 c = 154.615 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 50 77.7 0.309 63217 49129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.67 47.01 38169 2042 99.71 0.21243 0.20862 0.2085 0.28289 0.2737 RANDOM 41.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.14 -2.38 3.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.366 r_dihedral_angle_3_deg 21.342 r_dihedral_angle_4_deg 18.457 r_dihedral_angle_1_deg 7.314 r_scangle_it 5.139 r_scbond_it 2.934 r_mcangle_it 2.205 r_angle_refined_deg 2.159 r_mcbond_it 1.142 r_angle_other_deg 1.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.366 r_dihedral_angle_3_deg 21.342 r_dihedral_angle_4_deg 18.457 r_dihedral_angle_1_deg 7.314 r_scangle_it 5.139 r_scbond_it 2.934 r_mcangle_it 2.205 r_angle_refined_deg 2.159 r_mcbond_it 1.142 r_angle_other_deg 1.089 r_mcbond_other 0.172 r_chiral_restr 0.121 r_bond_refined_d 0.028 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7805 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling