☰ Navigation Tabs
Crystal Structure of HIV-1 CRF01_AE Protease in Complex with Darunavir
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TSU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 295 126mM Phosphate buffer pH 6.2, 63mM Sodium Citrate, 18-33% Ammonium Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.14 42.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.164 α = 90 b = 62.164 β = 90 c = 82.705 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-05-02 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.08 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 100 93.9 0.066 11.2 7.1 12493
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.02 100 0.363 7.5 1343
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1TSU 1.95 50 12399 611 93.5 0.203 0.2 0.259 0.2607 RANDOM 19.149
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.43 0.86 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.104 r_dihedral_angle_4_deg 21.001 r_dihedral_angle_3_deg 15.487 r_dihedral_angle_1_deg 6.667 r_scangle_it 3.126 r_scbond_it 2.004 r_angle_refined_deg 1.548 r_mcangle_it 1.514 r_mcbond_it 0.877 r_angle_other_deg 0.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.104 r_dihedral_angle_4_deg 21.001 r_dihedral_angle_3_deg 15.487 r_dihedral_angle_1_deg 6.667 r_scangle_it 3.126 r_scbond_it 2.004 r_angle_refined_deg 1.548 r_mcangle_it 1.514 r_mcbond_it 0.877 r_angle_other_deg 0.852 r_mcbond_other 0.218 r_chiral_restr 0.097 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1446 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 50
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling