3LR1

The crystal structure of the tungstate ABC transporter from Geobacter sulfurreducens


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52890.2M ammonium sulfate, 0.1M bis-tris, 25% PEG3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.1642.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.736α = 90
b = 70.386β = 90
c = 91.161γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rmirrors2008-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9794APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.849.5498.340.09123.839200721973922
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.84796.720.8171.887.41554

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.849.542007219739106898.340.185160.181060.26527RANDOM18.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.17-0.971.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.775
r_dihedral_angle_4_deg17.905
r_dihedral_angle_3_deg17.306
r_dihedral_angle_1_deg6.916
r_scangle_it6.86
r_scbond_it4.707
r_mcangle_it2.829
r_rigid_bond_restr2.028
r_angle_refined_deg1.954
r_mcbond_it1.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.775
r_dihedral_angle_4_deg17.905
r_dihedral_angle_3_deg17.306
r_dihedral_angle_1_deg6.916
r_scangle_it6.86
r_scbond_it4.707
r_mcangle_it2.829
r_rigid_bond_restr2.028
r_angle_refined_deg1.954
r_mcbond_it1.8
r_angle_other_deg1.085
r_mcbond_other0.556
r_chiral_restr0.14
r_bond_refined_d0.023
r_gen_planes_refined0.009
r_bond_other_d0.004
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1776
Nucleic Acid Atoms
Solvent Atoms173
Heterogen Atoms8

Software

Software
Software NamePurpose
SBC-Collectdata collection
HKL-3000phasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling