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IRE1 complexed with Cdk1/2 Inhibitor III
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RIO PDB ENTRY 2RIO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 298 hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.95 68.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.55 α = 90 b = 125.55 β = 90 c = 174.39 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2008-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.33 51.264 98.4 0.124 4.6 22895 22895
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2RIO 3.33 51.26 22877 1181 98.27 0.264 0.263 0.2547 0.284 0.2831 RANDOM 63.914
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.78 0.89 1.78 -2.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.508 r_dihedral_angle_4_deg 17.153 r_dihedral_angle_3_deg 14.773 r_dihedral_angle_1_deg 8.613 r_angle_other_deg 4.309 r_angle_refined_deg 1.507 r_scangle_it 0.736 r_scbond_it 0.426 r_mcangle_it 0.223 r_mcbond_it 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.508 r_dihedral_angle_4_deg 17.153 r_dihedral_angle_3_deg 14.773 r_dihedral_angle_1_deg 8.613 r_angle_other_deg 4.309 r_angle_refined_deg 1.507 r_scangle_it 0.736 r_scbond_it 0.426 r_mcangle_it 0.223 r_mcbond_it 0.111 r_chiral_restr 0.093 r_gen_planes_other 0.012 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6292 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 56
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing