3L4I

CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HSP70 (CGD2_20) FROM Cryptosporidium PARVUM IN COMPLEX WITH ADP and inorganic phosphate


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52934 mM MgCl2, 2 mM TCEP,20% P3350, 0.2M KCl, 2 mM ADP, 4 mM MgCL2, 2 mM TCEP, 25% Ethylene Glycol - Cryoprotectant, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5551.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.977α = 90
b = 115.324β = 90
c = 182.314γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++2009-11-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25099.80.0570.03414.76.9463644627243
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.241000.8240.7482.86.42291

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3kvg2.2504642746233233699.580.2090.2090.2060.252RANDOM11.246
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.46-0.771.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.012
r_dihedral_angle_4_deg15.438
r_dihedral_angle_3_deg15.305
r_dihedral_angle_1_deg5.301
r_scangle_it2.94
r_scbond_it1.835
r_angle_refined_deg1.256
r_mcangle_it1.245
r_angle_other_deg0.819
r_rigid_bond_restr0.738
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.012
r_dihedral_angle_4_deg15.438
r_dihedral_angle_3_deg15.305
r_dihedral_angle_1_deg5.301
r_scangle_it2.94
r_scbond_it1.835
r_angle_refined_deg1.256
r_mcangle_it1.245
r_angle_other_deg0.819
r_rigid_bond_restr0.738
r_mcbond_it0.673
r_mcbond_other0.135
r_chiral_restr0.071
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6039
Nucleic Acid Atoms
Solvent Atoms421
Heterogen Atoms73

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing