☰ Navigation Tabs
Structure-Based Mechanism of Dimerization-Dependent Ubiquitination by the SCFFbx4 Ubiquitin Ligase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 1.5-2 M sodium chloride, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 3.45 64.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.194 α = 90 b = 92.194 β = 90 c = 148.068 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2008-04-17 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-10-03 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X3A 1.0721 NSLS X3A 2 SYNCHROTRON NSLS BEAMLINE X29A 1.0809 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 50 99.8 0.086 0.086 31.5 14.3 17477 17477 84.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.9 100 0.856 0.856 2.2 14.3 1843
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.8 50 17477 17477 915 99.52 0.25171 0.24945 0.2673 0.29488 0.3119 RANDOM 37.752
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.89 1.95 3.89 -5.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_4_deg 16.873 r_dihedral_angle_3_deg 16.727 r_dihedral_angle_1_deg 4.047 r_scangle_it 2.419 r_angle_refined_deg 1.927 r_scbond_it 1.461 r_mcangle_it 1.073 r_angle_other_deg 1.026 r_mcbond_it 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_4_deg 16.873 r_dihedral_angle_3_deg 16.727 r_dihedral_angle_1_deg 4.047 r_scangle_it 2.419 r_angle_refined_deg 1.927 r_scbond_it 1.461 r_mcangle_it 1.073 r_angle_other_deg 1.026 r_mcbond_it 0.56 r_mcbond_other 0.089 r_chiral_restr 0.065 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3349 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling