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E. coli NrfA sulfite ocmplex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RDZ PDB ENTRY 2RDZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 100mM HEPES, 20% PEG 10K, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.56 51.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.52 α = 90 b = 82.234 β = 101.08 c = 142.172 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 60.9 99.8 0.086 7.8 3.8 91009 91009 32.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 99.6 0.425 1.8 3.8 13192
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2RDZ 2.3 50.36 86417 4553 99.67 0.17971 0.17661 0.1762 0.23809 0.2326 RANDOM 29.168
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.727 r_dihedral_angle_3_deg 16.175 r_dihedral_angle_4_deg 14.981 r_dihedral_angle_1_deg 5.44 r_scangle_it 2.484 r_scbond_it 1.589 r_angle_refined_deg 1.233 r_mcangle_it 0.959 r_mcbond_it 0.498 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.727 r_dihedral_angle_3_deg 16.175 r_dihedral_angle_4_deg 14.981 r_dihedral_angle_1_deg 5.44 r_scangle_it 2.484 r_scbond_it 1.589 r_angle_refined_deg 1.233 r_mcangle_it 0.959 r_mcbond_it 0.498 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13904 Nucleic Acid Atoms Solvent Atoms 957 Heterogen Atoms 936
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling