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The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 20% PEG8000, 0.1M Tris, 0.2M MgCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.66 66.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.304 α = 90 b = 118.108 β = 90 c = 206.674 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r mirrors 2008-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 102.54 98.38 0.121 16.45 7.4 117520 115617 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 93.44 0.56 2.18 6.8 9082
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 31.782 2 117520 115617 6103 98.38 0.18132 0.17935 0.1888 0.21836 0.2255 RANDOM 17.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.61 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.062 r_dihedral_angle_3_deg 15.712 r_dihedral_angle_4_deg 14.789 r_scangle_it 6.184 r_dihedral_angle_1_deg 5.965 r_scbond_it 4.111 r_mcangle_it 2.163 r_angle_refined_deg 2.149 r_mcbond_it 1.135 r_chiral_restr 0.155
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.062 r_dihedral_angle_3_deg 15.712 r_dihedral_angle_4_deg 14.789 r_scangle_it 6.184 r_dihedral_angle_1_deg 5.965 r_scbond_it 4.111 r_mcangle_it 2.163 r_angle_refined_deg 2.149 r_mcbond_it 1.135 r_chiral_restr 0.155 r_bond_refined_d 0.026 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10026 Nucleic Acid Atoms Solvent Atoms 964 Heterogen Atoms 151
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling