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Crystal structure of orphan nuclear receptor RORgamma in complex with natural ligand
Crystallization Crystal Properties Matthews coefficient Solvent content 1.99 38.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.978 α = 90 b = 53.978 β = 90 c = 162.583 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 0.12 22.7 10.7 10736 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 19.84 10138 511 99.91 0.20239 0.19749 0.1955 0.298 0.3073 RANDOM 28.858
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.093 r_dihedral_angle_4_deg 20.631 r_dihedral_angle_3_deg 20.533 r_dihedral_angle_1_deg 7.144 r_scangle_it 4.43 r_scbond_it 2.917 r_angle_refined_deg 1.945 r_mcangle_it 1.705 r_mcbond_it 1.071 r_symmetry_hbond_refined 0.371
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.093 r_dihedral_angle_4_deg 20.631 r_dihedral_angle_3_deg 20.533 r_dihedral_angle_1_deg 7.144 r_scangle_it 4.43 r_scbond_it 2.917 r_angle_refined_deg 1.945 r_mcangle_it 1.705 r_mcbond_it 1.071 r_symmetry_hbond_refined 0.371 r_nbtor_refined 0.314 r_nbd_refined 0.239 r_symmetry_vdw_refined 0.234 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.142 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2090 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 29
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling