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An orally active inhibitor bound at the active site of HPGDS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 100mM Tris, pH 8.5, 5mM glutathione, 28-34% PEG 3350, 20-200mM MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 41.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.799 α = 90 b = 78.364 β = 91.61 c = 52.455 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2006-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 98.8 0.063 18.1 2.9 23087 22810 -500 -1 23.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 99.3 0.19 4.85 2.8 2267
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.1 19.72 21689 21689 1104 98.59 0.16645 0.16364 0.1715 0.22166 0.2266 RANDOM 22.321
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.15 -0.51 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.71 r_dihedral_angle_4_deg 14.763 r_dihedral_angle_3_deg 12.65 r_dihedral_angle_1_deg 5.415 r_scangle_it 1.885 r_scbond_it 1.177 r_angle_refined_deg 1.057 r_mcangle_it 0.985 r_angle_other_deg 0.869 r_mcbond_it 0.598
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.71 r_dihedral_angle_4_deg 14.763 r_dihedral_angle_3_deg 12.65 r_dihedral_angle_1_deg 5.415 r_scangle_it 1.885 r_scbond_it 1.177 r_angle_refined_deg 1.057 r_mcangle_it 0.985 r_angle_other_deg 0.869 r_mcbond_it 0.598 r_symmetry_vdw_other 0.222 r_nbd_refined 0.2 r_nbtor_refined 0.188 r_nbd_other 0.182 r_symmetry_hbond_refined 0.123 r_symmetry_vdw_refined 0.12 r_xyhbond_nbd_refined 0.115 r_mcbond_other 0.088 r_nbtor_other 0.082 r_chiral_restr 0.057 r_metal_ion_refined 0.039 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3276 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 95
Software Software Software Name Purpose MAR345 data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing