☰ Navigation Tabs
Crystal Structure of SB27 TCR in complex with the 'restriction triad' mutant HLA-B*3508-13mer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.7 298 0.1M cacodlyate, 0.2M potassium iodide, 18% polyethylene glycol 3350, pH 6.7, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.64 53.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.69 α = 90 b = 207.077 β = 90.19 c = 123.512 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2009-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 80 0.096 5.1 71533 63
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.2 0.341 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 80 67602 3612 99.56 0.217 0.213 0.1844 0.291 0.2138 RANDOM 24.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.14 2.24 -2.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.539 r_dihedral_angle_3_deg 18.133 r_dihedral_angle_4_deg 15.156 r_dihedral_angle_1_deg 5.758 r_scangle_it 2.714 r_scbond_it 1.62 r_mcangle_it 1.198 r_angle_refined_deg 1.022 r_mcbond_it 0.619 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.539 r_dihedral_angle_3_deg 18.133 r_dihedral_angle_4_deg 15.156 r_dihedral_angle_1_deg 5.758 r_scangle_it 2.714 r_scbond_it 1.62 r_mcangle_it 1.198 r_angle_refined_deg 1.022 r_mcbond_it 0.619 r_nbtor_refined 0.302 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.167 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26910 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 24
Software Software Software Name Purpose PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling