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Crystal structure of His-tagged form of PA4794 protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I6C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 1.5 M Ammonium Sulfate,
0.1 M Tris pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.534 α = 90 b = 76.145 β = 90 c = 39.454 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r mirrors 2009-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9792 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 50 99.9 0.047 0.047 47.19 6.5 34174 34174 -3 14.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.41 1.43 100 0.391 0.391 4.18 5.7 1658
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2i6c 1.41 45.9 32398 32398 1727 99.89 0.15749 0.15749 0.15628 0.1655 0.17922 0.1912 RANDOM 13.124
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.28 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.085 r_dihedral_angle_4_deg 14.234 r_dihedral_angle_3_deg 11.405 r_dihedral_angle_1_deg 5.743 r_scangle_it 4.428 r_angle_other_deg 4.103 r_scbond_it 2.877 r_mcangle_it 1.974 r_angle_refined_deg 1.818 r_mcbond_it 1.169
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.085 r_dihedral_angle_4_deg 14.234 r_dihedral_angle_3_deg 11.405 r_dihedral_angle_1_deg 5.743 r_scangle_it 4.428 r_angle_other_deg 4.103 r_scbond_it 2.877 r_mcangle_it 1.974 r_angle_refined_deg 1.818 r_mcbond_it 1.169 r_chiral_restr 0.112 r_bond_refined_d 0.019 r_gen_planes_other 0.014 r_gen_planes_refined 0.01 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1326 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 78
Software Software Software Name Purpose HKL-2000 data collection HKL-3000 phasing REFMAC refinement Coot model building HKL-2000 data reduction HKL-2000 data scaling