☰ Navigation Tabs
Crystal structure of a cupin 2 conserved barrel domain protein from Rhodopseudomonas palustris
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 294 100mM Bis-Tris pH 5.5, 19% PEG 3350, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.31 46.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.854 α = 90 b = 80.382 β = 90 c = 110.081 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 64.917 99.8 0.099 0.099 17.6 14.6 28776 28718 21.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 99.6 0.373 0.373 7 14.6 4114
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 20 28718 28638 1451 99.72 0.202 0.199 0.2136 0.248 0.2547 RANDOM 23.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.01 0.08 1.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.663 r_dihedral_angle_4_deg 12.866 r_dihedral_angle_3_deg 12.301 r_dihedral_angle_1_deg 5.86 r_scangle_it 3.614 r_scbond_it 2.362 r_mcangle_it 1.631 r_angle_refined_deg 1.493 r_mcbond_it 0.884 r_angle_other_deg 0.841
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.663 r_dihedral_angle_4_deg 12.866 r_dihedral_angle_3_deg 12.301 r_dihedral_angle_1_deg 5.86 r_scangle_it 3.614 r_scbond_it 2.362 r_mcangle_it 1.631 r_angle_refined_deg 1.493 r_mcbond_it 0.884 r_angle_other_deg 0.841 r_mcbond_other 0.23 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2268 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 2
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building