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The crystal structure of the RsbU and RsbW domains of Rv1364c from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 292.16 1.2 M ammonium sulphate, 0.05 M N-(2-Acetamido)iminodiacetic Acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292.16K
Crystal Properties Matthews coefficient Solvent content 2.51 51.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.118 α = 90 b = 100.118 β = 90 c = 169.653 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 1.0 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 99.3 0.118 9.1 15.2 27047 27047 1 1 62.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.64 98 2.67 14.1 1291
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 19.63 25612 25612 1356 99.2 0.21096 0.21096 0.2081 0.2755 0.26681 0.3101 RANDOM 44.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.46 1.46 -2.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.592 r_dihedral_angle_4_deg 19.807 r_dihedral_angle_3_deg 16.992 r_dihedral_angle_1_deg 6.701 r_scangle_it 4.22 r_scbond_it 2.949 r_angle_refined_deg 1.383 r_mcangle_it 1.063 r_angle_other_deg 0.907 r_mcbond_it 0.812
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.592 r_dihedral_angle_4_deg 19.807 r_dihedral_angle_3_deg 16.992 r_dihedral_angle_1_deg 6.701 r_scangle_it 4.22 r_scbond_it 2.949 r_angle_refined_deg 1.383 r_mcangle_it 1.063 r_angle_other_deg 0.907 r_mcbond_it 0.812 r_nbd_refined 0.212 r_nbd_other 0.203 r_symmetry_vdw_refined 0.192 r_symmetry_vdw_other 0.192 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.163 r_mcbond_other 0.104 r_nbtor_other 0.087 r_chiral_restr 0.08 r_symmetry_hbond_refined 0.017 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5169 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 15
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling