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Crystal structure of Putative sugar binding protein (YP_001300177.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2000M (NH4)2HPO4, 50.0000% MPD, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.79 55.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.303 α = 90 b = 75.303 β = 90 c = 87.128 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-07-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97929 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28.49 99.5 0.04 16.69 31900 -3 24.086
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 98 0.55 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 28.49 31866 1609 99.79 0.154 0.152 0.1768 0.191 0.2123 RANDOM 14.705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.09 -0.19 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.239 r_dihedral_angle_4_deg 13.321 r_dihedral_angle_3_deg 13.217 r_dihedral_angle_1_deg 4.456 r_scangle_it 3.986 r_scbond_it 2.528 r_angle_refined_deg 1.518 r_mcangle_it 1.504 r_angle_other_deg 1.041 r_mcbond_it 0.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.239 r_dihedral_angle_4_deg 13.321 r_dihedral_angle_3_deg 13.217 r_dihedral_angle_1_deg 4.456 r_scangle_it 3.986 r_scbond_it 2.528 r_angle_refined_deg 1.518 r_mcangle_it 1.504 r_angle_other_deg 1.041 r_mcbond_it 0.827 r_mcbond_other 0.284 r_chiral_restr 0.097 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1626 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction