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The crystal structure of the protein CinA with unknown function from Thermoplasma acidophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 40% PEG600, 0.1M citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.15 42.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.596 α = 90 b = 39.718 β = 90 c = 55.946 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2009-08-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794, 0.9796 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 55.99 98.52 0.114 23.5 8.1 21287 20972 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 97.64 0.773 2.64 8.2 1607
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 55.99 21287 20972 1128 98.52 0.20479 0.20282 0.1983 0.2413 0.2421 RANDOM 31.506
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.1 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.403 r_dihedral_angle_3_deg 16.712 r_dihedral_angle_4_deg 15.399 r_dihedral_angle_1_deg 6.358 r_scangle_it 4.777 r_scbond_it 2.952 r_mcangle_it 1.723 r_angle_refined_deg 1.641 r_mcbond_it 0.941 r_chiral_restr 0.119
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.403 r_dihedral_angle_3_deg 16.712 r_dihedral_angle_4_deg 15.399 r_dihedral_angle_1_deg 6.358 r_scangle_it 4.777 r_scbond_it 2.952 r_mcangle_it 1.723 r_angle_refined_deg 1.641 r_mcbond_it 0.941 r_chiral_restr 0.119 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2514 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 5
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling